新种发现

2019年本中心完成的海洋细菌新物种的系统分类鉴定

文章来源: 发布时间:2020-01-01 阅读次数:1469

2019年至今支撑14个原核微生物新种,其中有2个是新的属(下表加粗部分)。研究结果已发表在微生物新种鉴定的权威刊物International Journal of Systematic and Evolutionary Microbiology等期刊上。这些菌株分离自印度洋深海以及中国南海等近海。(如下表)。

序号

属种名

中文译名

保藏中心编号

分离源

1

Acuticoccus sediminis

沉积物尖球菌

MCCC 1A01274

印度洋深海沉积物

2

Altererythrobacter aerophilus

嗜气交替赤杆菌

MCCC 1A10037

西太平洋深层海水

3

Chengkuizengella marina

海洋曾呈奎菌

MCCC 1A14042

西太平洋多管表层沉积物

4

Cohaesibacter intestini

肠粘杆菌

MCCC 1A13131

泉州市健康鲍鱼肠道

5

Hydrocarboniclastica marina

海洋解碳水化合物菌

MCCC 1A12105

中国南海表层沉积物

6

Lottiidibacillus patelloidae

帽贝莲花青螺芽胞杆菌

MCCC 1A11654

厦门沿海帽贝肠道

7

Muricauda amoyensis

厦门鼠尾菌

MCCC 1A11649

厦门市近海潮间带沉积物

8

Nonlabens xiamenensis

厦门不滑动菌

MCCC 1A14023

厦门市近海上层海水

9

Paracoccus amoyensis

厦门副球菌

MCCC 1A16380

厦门市近海表层海水 

10

Pararhodobacter marinus

大海副红细菌

MCCC 1A01225

印度洋底层水样

11

Roseovarius amoyensis

厦门玫瑰变色菌

MCCC 1A11651

厦门市近海潮间带沉积物

12

Sinomicrobium soli

土壤中华微菌

MCCC 1A06047

挪威斯匹次卑尔根岛机场附近土样

13

Sulfurovum indicum

印度洋硫卵菌

MCCC 1A17954

西北印度洋深层水样

14

Tsuneonella suprasediminis

表层沉积物常尾氏菌

MCCC 1A04421

西南太平洋沉积物上覆水

Acuticoccus sediminis sp. nov., isolated from deep-sea sediment of the Indian Ocean and proposal of Acuticoccaceae fam. nov

种名定义:se.di’mi.nis. L. gen. neut. n. sediminis, of a sediment

中文名:沉积物尖球菌

模式菌株:PTG4-2T (=MCCC 1A01274T=KCTC 52323T) 分离自印度洋深海沉积物

新种论文:Lai Q, Liu X, Sun F, Shao Z. Acuticoccus sediminis sp. nov., isolated from deep-sea sediment of the Indian Ocean and proposal of Acuticoccaceae fam. nov. Int J Syst Evol Microbiol. 2019 Apr;69(4):1173-1178. doi: 10.1099/ijsem.0.003289. Epub 2019 Feb 27. 新种特征描述:模式菌株,革兰氏阴性,该菌卵形、不具鞭毛;生长温度范围4-40℃(最适30℃),生长pH范围6.0-10.0(最适pH 7.0),生长所需NaCl浓度范围1-9%(最适3%);在2216e培养基上菌落呈淡橙色,不透明,表面光滑,边缘规则,中央凸起,无晕环,菌落大小2-3mm 

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Altererythrobacter aerophilus sp. nov., isolated from deep-sea water of the north-west Pacific

 

种名定义: aer.o.phi’lus. Gr. masc. n. aêr, air; N.L. adj. philus -a -um, friend, loving; from Gr. adj. philos -ê -on, loving; N.L. masc. adj. aerophilus, air-loving

中文名:嗜气交替赤杆菌

模式菌株: Ery1T (=KCTC 62387T=CGMCC 1.16499T=MCCC 1A10037T). 分离自西太平洋深层海水

新种论文: Meng FX, Li G, Fang C, Wu YH, Cheng H, Chen Y, Wang CS, Shao Z, Xu XW.Altererythrobacter aerophilus sp. nov., isolated from deep-sea water of the north-west Pacific. Int J Syst Evol Microbiol. 2019 Jun;69(6):1689-1695. doi: 10.1099/ijsem.0.003377. Epub 2019 Apr 3. 新种特征描述:模式菌株;革兰氏阴性,该菌好氧、杆状(长1.4-2.7um,直径0.4-0.5um)、不具鞭毛;长温度范围10-45℃(最适30-40℃),生长pH范围5.0-9.5(最适pH 6.0-7.0),生长所需NaCl浓度范围0-10%(最适0-1%);在MA培养基上菌落呈土黄色,边缘规则半透明,表面光滑湿润,无晕环,中央有凸起。 MA培养基上28℃生长6天,淀粉酶、蛋白酶、脂酶(三丁酸甘油酯)呈阴性;T40呈阳性。 

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Chengkuizengella marina sp. nov., isolated from deep-sea sediment of the Pacific Ocean

种名定义: ma.ri’na. L. fem. adj. marina, of the sea, marine

中文名:海洋曾呈奎菌

模式菌株: YPA3-1-1T (=MCCC 1A14042T=KCTC 43019T). 分离自西太平洋多管表层沉积物

新种论文: Yang J, Lai Q, Liao X, Zhao Q, Shao Z. Chengkuizengella marina sp. nov., isolated from deep-sea sediment of the Pacific Ocean. Int J Syst Evol Microbiol. 2019 Aug;69(8):2522-2526. doi: 10.1099/ijsem.0.003530. Epub 2019 Jun 19. 新种特征描述:模式菌株;革兰氏阳性,该菌好氧、杆状(长2.5um,直径0.5um)、可运动、不产色素;生长温度范围10-40℃(最适生长温度28-33℃),生长pH范围6.0-10.0(最适生长pH 7.0),生长所需NaCl范围1.0-6.0%(最适NaCl浓度3.0%);在MA培养基上25℃生长3天,菌落呈圆形,淡黄色边缘透明,表面光滑偏湿润,边缘规则,无晕环,中央凸起,直径23mm 

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Cohaesibacter intestini sp. nov., isolated from the intestine of abalone, Haliotis discus hannai

种名定义: in.tes.ti’ni. L. gen. neut. n. intestini, the intestine of abalone, Haliotis, where the type strain is isolated

中文名:肠粘杆菌

模式菌株: YE-B6T (=MCCC 1A13131T=KCTC 62716T). 分离自泉州市健康鲍鱼肠道

新种论文: Liu M, Huang Z, Zhao Q, Shao Z. Cohaesibacter intestini sp. nov., isolated from the intestine of abalone, Haliotis discus hannai. Int J Syst Evol Microbiol. 2019 Oct;69(10):3202-3206. doi: 10.1099/ijsem.0.003610. 新种特征描述:厌氧菌(兼性);模式菌株;革兰氏阴性,不可运动、杆状(长1-6um,直径0.6-1.0um);生长温度范围10-37℃(最适温度28-33℃,生长pH 7.0-9.0(最适pH 7.0),生长所需NaCl浓度为0-8%(最适2%);MA培养基上28℃,培养3天观察菌落:1-3mm、圆形、米色、微凸、边缘整齐。

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Hydrocarboniclastica marina gen. nov., sp. nov., a marine hydrocarbonoclastic bacterium isolated from an in situ enriched hydrocarbon-degrading consortium in sea sediment

种名定义: ma.ri’na. L. fem. adj. marina, marine

中文名:海洋解碳水化合物菌

模式菌株: Soil36-7T (=MCCC 1A12105T=KCTC 62334T). 分离自中国南海表层沉积物

新种论文: Dong C, Ma T, Liu R, Lai Q, Shao Z. Hydrocarboniclastica marina gen. nov., sp. nov., a marine hydrocarbonoclastic bacterium isolated from an in situ enriched hydrocarbon-degrading consortium in sea sediment. Int J Syst Evol Microbiol. 2019 Aug;69(8):2250-2257. doi: 10.1099/ijsem.0.003454. Epub 2019 Jun 11. 新种特征描述:模式菌株;革兰氏阴性,该菌好氧、杆状(长2.3-2.8um,直径0.5-0.8um)、可运动、具鞭毛;生长温度范围4-40℃(最适28-32℃),生长pH范围5.0-10.0(最适pH 7.0-8.0),生长所需NaCl浓度范围1-12%(最适3-6%);在R2A培养基上4℃生长,菌落呈圆形,白色透明,表面光滑偏湿润,边缘规则,无晕环,中央微凸,直径0.5mm 

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Lottiidibacillus patelloidae gen. nov., sp. nov., isolated from the intestinal tract of a marine limpet and reclassification of Bacillus taeanensis as Maribacillus taeanensis gen. nov., comb. nov

种名定义: pa.tel.lo’i.dae. N.L. gen. fem. n. patelloidae, of the limpet Patelloida saccharina

中文名:帽贝莲花青螺芽胞杆菌

模式菌株: SA5d-4T (= MCCC 1A11654T = KCTC 33831T). 分离自厦门沿海帽贝肠道

新种论文: Liu R, Huang Z, Dong C, Shao Z. Lottiidibacillus patelloidae gen. nov., sp. nov., isolated from the intestinal tract of a marine limpet and reclassification of Bacillus taeanensis as Maribacillus taeanensis gen. nov., comb. nov. Antonie Van Leeuwenhoek. 2019 May;112(5):797-807. doi: 10.1007/s10482-018-01213-z. Epub 2019 Jan 1. 新种特征描述:模式菌株;革兰氏阳性,该菌严格好氧、丝状(长8-14um,直径0.2-0.3um)、不具鞭毛、不运动、不产孢子;氧化酶活性检测呈阴性、过氧化氢酶活性检测呈弱阳性;GC含量35.3mol%;在MA平板上生长3天,菌落形态呈微凸、边缘规则、光滑、亮黄色、半透明、直径1-2mm 

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Roseovarius amoyensis sp. nov. and Muricauda amoyensis sp. nov., isolated from the Xiamen coast.

种名定义:Roseovarius amoyensis (a.moy’en’sis. N.L. masc./fem. adj. amoyensis, pertaining to Amoy, meaning Xiamen in southern Fujian dialect, the city where the type strain was isolated).

中文名:厦门玫瑰变色菌

模式菌株:GCL-8T (=MCCC 1A11651T = KCTC 52430T)分离自厦门市近海潮间带沉积物。

新种论文:Li G, Lai Q, Yan P, Shao Z. Roseovarius amoyensis sp. nov. and Muricauda amoyensis sp. nov., isolated from the Xiamen coast. Int J Syst Evol Microbiol. 2019 Oct;69(10):3100-3108. doi: 10.1099/ijsem.0.003595. 新种特征描述:厌氧菌(兼性);模式菌株;革兰氏阴性,该菌杆状(长0.9-2.6um,直径0.3-1.0um)、不运动;生长温度范围4-41℃(最适28℃),生长pH范围6.0-9.0(最适pH 7.0-8.0),生长所需NaCl浓度范围0-8%(最适1-3%);菌落呈圆形,乳白色不透明,表面光滑偏湿润,边缘规则,无晕环,菌落型态大;在28℃条件下,生长3天,即能看见明显的较大菌落。 

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Nonlabens xiamenensis sp. nov., isolated from coastal seawater

种名定义:xia.men.en’sis. N.L. masc./fem. adj. xiamenensis, belonging to Xiamen, a coastal city in South China, where the type strain was isolated [probably better: xiamensis]

中文名:厦门不滑动菌

模式菌株:1Q3T (= MCCC 1A14023T = KCTC 62889T). 分离自厦门市近海上层海水

新种论文:Huang Z, Du Y, Lai Q, Shao Z. Nonlabens xiamenensis sp. nov., isolated from coastal seawater. Antonie Van Leeuwenhoek. 2019 Aug;112(8):1263-1271. doi: 10.1007/s10482-019-01258-8. Epub 2019 Apr 2. 新种特征描述:模式菌株;革兰氏阴性,杆状(长1.0-6.0um,直径0.7-1.0um)、不会滑动、不具鞭毛;生长温度范围10-37℃(最适温度28℃);氧化酶活性检测呈阳性,过氧化氢酶活性检测呈阴性;在MB培养基上28℃下培养2天后,菌落形态呈橙色、小、光滑、圆形。 

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Paracoccus amoyensis sp. nov., isolated from the surface seawater along the coast of Xiamen Island, China

种名定义: a.moy.en’sis. N.L. masc./fem. adj. amoyensis, pertaining to Amoy, meaning Xiamen in Fujian dialect, PR China where the type strain was isolated

中文名:厦门副球菌

模式菌株: 11-3T (=MCCC 1A16380T=KCTC 72689T). 分离自厦门市近海表层海水

新种论文: Lyu L, Lai Q, Li J, Yu Z, Shao Z. Paracoccus amoyensis sp. nov., isolated from the surface seawater along the coast of Xiamen Island, China. Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004685. Epub 2021 Feb 2. 新种特征描述:模式菌株;革兰氏阴性,短杆状(长1.0-2.0um,直径0.5-1.0um)、不可运动;生长温度范围15-37℃(最适温度28-35℃),生长pH 6.5-7.5(最适pH 7.0),生长所需NaCl浓度为0-1.5%(最适0%);氧化酶和过氧化氢酶活性检测均为阳性。 

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Pararhodobacter marinus sp. nov., isolated from deep-sea water of the Indian Ocean

种名定义: ma.ri’nus. L. masc. adj. marinus, of the sea, marine

中文名:大海副红细菌

模式菌株: CIC4N-9T (=MCCC 1A01225T=KCTC 52336T). 分离自印度洋底层水样

新种论文: Lai Q, Liu X, Yuan J, Xie S, Shao Z. Pararhodobacter marinus sp. nov., isolated from deep-sea water of the Indian Ocean. Int J Syst Evol Microbiol. 2019 Apr;69(4):932-936. doi: 10.1099/ijsem.0.003219. Epub 2019 Jan 4. 新种特征描述:模式菌株;革兰氏阴性菌,该菌杆状(长2.0um,直径0.9um);生长温度范围4-41℃(最适28-30℃),生长pH范围6-9(最适pH 7),生长所需NaCl浓度范围0-9%(最适3%);菌落淡红色,圆形,表面光滑湿润,边缘整齐,中央略隆起,不透明。 

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Roseovarius amoyensis sp. nov. and Muricauda amoyensis sp. nov., isolated from the Xiamen coast

种名定义:a.moy’en’sis. N.L. masc./fem. adj. amoyensis, pertaining to Amoy, meaning Xiamen in southern Fujian dialect, the city where the type strain was isolated

中文名: 厦门鼠尾菌

模式菌株: GCL-11T (=MCCC 1A11649T=KCTC 52432T) 分离自厦门市近海潮间带沉积物

新种论文:Li G, Lai Q, Yan P, Shao Z. Roseovarius amoyensis sp. nov. and Muricauda amoyensis sp. nov., isolated from the Xiamen coast. Int J Syst Evol Microbiol. 2019 Oct;69(10):3100-3108. doi: 10.1099/ijsem.0.003595. 新种特征描述: 厌氧菌(兼性);模式菌株;革兰氏阴性,该菌杆状(长1.1-3.0um,直径0.5-0.8um)、不运动;生长温度范围4-41℃(最适28℃),生长pH范围6.0-9.0(最适pH 6.0-7.0),生长所需NaCl浓度范围0.5-8%(最适3-5%);菌落呈圆形,乳黄色不透明,表面光滑偏湿润,边缘规则,无晕环,菌落型态大;在28℃条件下,生长3天,即能看见明显的较大菌落。 

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Sinomicrobium soli sp. nov., isolated from arctic soil

种名定义:so’li. L. gen. neut. n. soli, of soil, the source of the type strain

中文名:土壤中华微菌

模式菌株:N-1-3-6T (=MCCC 1A06047T=KCTC 52339T). 分离自挪威斯匹次卑尔根岛机场附近土样

新种论文:Liu X, Lai Q, Du Y, Zhang X, Zhong H, Shao Z. Sinomicrobium soli sp. nov., isolated from arctic soil. Int J Syst Evol Microbiol. 2019 Apr;69(4):1070-1074. doi: 10.1099/ijsem.0.003273. Epub 2019 Feb 12. 新种特征描述:模式菌株;革兰氏阴性,生长温度范围10-45℃(最适28-37℃),生长pH范围6-9(最适pH 7),生长所需NaCl浓度范围0-12%(最适0.5-2%);菌落呈深黄褐色,表面不光滑,边缘无规则,扁平,不透明,有较大晕圈。 

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Sulfurovum indicum sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal plume in the Northwestern Indian Ocean

种名定义: in’di.cum. L. neut. adj. indicum, Indian, referring to the Indian Ocean, where the type strain was first isolated

中文名:印度洋硫卵菌

模式菌株: ST-419T (=MCCC 1A17954T=KCTC 25164T). 分离自西北印度洋深层水样

新种论文: Xie S, Wang S, Li D, Shao Z, Lai Q, Wang Y, Wei M, Han X, Jiang L.Sulfurovum indicum sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal plume in the Northwestern Indian Ocean. Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004748. Epub 2021 Mar 18. 新种特征描述:微好氧菌(0~8%);革兰氏阴性,该菌卵形球状、不运动;化能自养菌;生长温度范围4-50℃(最适37℃),生长pH范围5.0-8.6(最适pH 6.0),生长所需NaCl浓度范围1.0-5.0%(最适3.0%);硫氧化,反硝化;革兰氏阴性;杆状。 

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Tsuneonella suprasediminis sp. nov., isolated from the Pacific Ocean

种名定义: sup.ra.se.di’mi.nis. L. prep. supra, above; L. gen. neut. n. sediminis, of sediment; N.L. gen. neut. n. suprasediminis, from above the sediment

中文名:表层沉积物常尾氏菌

模式菌株: Ery12T (=CGMCC 1.16500 T=MCCC 1A04421T=KCTC 62388T). 分离自西南太平洋沉积物上覆水

新种论文: Gao Y, Li G, Fang C, Shao Z, Wu YH, Xu XW.Tsuneonella suprasediminis sp. nov., isolated from the Pacific Ocean. Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004678. Epub 2021 Feb 2. 新种特征描述:模式菌株;革兰氏阴性;杆状;不产芽孢;生长温度范围10-42℃(最适30-37℃),生长pH范围5.0-9.5(最适pH 7.0),生长所需NaCl浓度范围0-10%(最适0-1%);在M2平板上25℃生长1周,菌落呈米黄色至金黄色;光滑湿润,不透明,凸起,边缘整齐,无晕,直径1mm
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